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SECTION B: LIFE SCIENCES

Vol. 7 No. 1 (2015)

Identification of S alleles associated with self-incompatibility in capuli (<em>Prunus ser&oacute;tina</em> subsp. <em>capul&iacute;</em>) samples by amplification of the Intron I of the S-RNasa gene

DOI
https://doi.org/10.18272/aci.v7i1.224
Submitted
November 24, 2015
Published
2015-05-22

Abstract

In plants, gametophytic self-incompatibility is a genetic mechanism regulated by the S locus, which has evolved to prevent self-fertilization. In fruit crops, information regarding the allelic composition of the S locus is essential for the establishment of productive orchards, as this allelic composition defines compatible combinations between individuals. The identification and cloning of S-RNase genes in Prunus species has allowed the development of molecular techniques for the characterization of S genotypes in wild and less-studied species of the genus. In this study we evaluated 80 individuals of capulí (Prunus serotina subsp. capulí) collected from 8 provinces of the Ecuadorian highlands to determinate the degree of allelic diversity of the S locus in this species. The molecular characterization of S loci was performed using degenerate primers designed from conserved regions of the S-RNase gene of several Prunus species. PCR products were separated on agarose gels, classified based on band size and sequenced. Our results reveal the presence of 11 alleles across sampled individuals. Generally, identified alleles showed a high percentage of identity with S-locus sequences reported for other species of the genus and it can be speculated that these derive from a common ancestor. By contrast, sequences with a lower percentage of identity may have originated independently following the diversification of Prunus species. The results obtained in this study should be complemented with field tests to confirm the phenotypic behavior of the capuli individuals analyzed.

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References

  1. De Nettancourt, D. 2001. "Incompatibility and and Incongruity in Wild and Cultivated Plants." Springer-Verlar, Berlin,: 322.
  2. Newbigin, E.; Anderson, A.; Clarke, A. 1993. "Gametophytic self-incompatibility systems." The Plant Cell, 5: 1315-1324.
  3. Haring, V; Gray, J.; McClure, B.; Anderson, M.; Clarke, A. 1990. "Self-incompatibility: a self-recognition system in plants." Science, 250: 937-941.
  4. Kao, T.; McCubbin, A. 1996. "How flowering plants discriminate between self and non-self pollen to prevent inbreeding." Proceedings of the National Academy of Sciences USA, 93: 12059-12065.
  5. Intriago, D. 2013. "Análisis de la diversidad genética del capulí (Prunus serotina subsp. capulí) en la región interandina del Ecuador mediante marcadores microsatélites." Universidad San Francisco de Quito, Tesis de Pregrado: Quito - Ecuador.
  6. Guadalupe, J. 2013. "Estudio preliminar de la diversidad genética del capulí en cinco provincias de la región andina del Ecuador." Universidad San Francisco de Quito, Tesis de Pregrado: Quito - Ecuador.
  7. Crane, M.; Brown, A. 1937. "Incompatibility and sterility in the sweet cherry, Prunus avium." J Pomol Hort Sci, 15: 86-116.
  8. Crossa-Raynaud, P.; Grasselly, C. 1985. "Éxistence de groupes d"™interstérilité chez l"™amandier." Options Méditerr. Serie Études, 1: 43-45.
  9. Kester, D.; Gradziel, T.; Micke, W. 1994. "Identifying pollen incompatibility groups in California almond cultivars." Journals of the American Society for Horticultural Science, 119: 106-109.
  10. Boskovic, R.; Tobutt, K.; Batlle, I.; Duval, H. 1997. "Correlation of ribonuclease zymograms and incompatibility genotypes in almond." Euphytica, 97: 167-176.
  11. Boskovic, R.; Tobutt, K. 2001. "Genotyping cherry cultivare assigned to incompatibility groups, by analysing stylar ribonucleases." Theor Appl Genet, 103: 475-485.
  12. Ushijima, K.; Sassa, H.; Tao, R.; Yamane, H.; Dandekar, A.; Gradziel, T.; Hirano, H. 1998. "Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae." Molecular Genetics, 260: 261-268.
  13. Sonneveld, T.; Tobutt, K. 2003. "Allele-specific PCR detection of sweet cherry self-incompatibility (S) alleles S1 to S16 using consensus and allele-specific primers." Theoretical and Applied Genetics, 107 (6): 1059-1070.
  14. Tamura, M.; Ushijima, K.; Sassa, H.; Hirano, H.; Tao, R.; Gradziel, T.; Dandekar, A. 2000. "Identification of self-incompatibility genotypes of almond by allele specific PCR analysis." Theoretical and Applied Genetics, 101 (3): 344-349.
  15. Ortega, E.; Sutherland, B.; Dicenta, F.; Boskovic, R.; Tobutt, K. 2005. "Determination of incompatibility genotypes in almond using first and second intron consensus primers: detection of new S alleles and correction of reported S genotypes." Plant Breeding, 124 (2): 188-196.
  16. Popenoe, W.; Pachano, A. 1922. "The Capulín Cherry." Journal of Heredity, 13: 50-62.
  17. Mille, L. 1942. "El Capulí." FLORA-Instituto de Ciencias Naturales del Ecuador, 2: 50-51.
  18. Wu, J.; Gu, C.; Khan, M.; Gao, Y; Wang, C.; Zhang, S. 2013. "Molecular Determinants and Mechanisms of Gametophytic Self-Incompatibility in Fruit Trees of Rosaceae." Critical Reviews in Plant Sciences, 32 (1): 53-68.
  19. Ortega, E.; Boskovic, R.; Sargent, D.; Tobutt, K. 2006. "Analysis of S-RNase alleles of almond (Prunus dulcis): characterization of new sequences, resolution of synonyms and evidence of intragenic. Molecular Genetics and Genomics: MGG, 276 (5): 413-426.
  20. Rahemi, A.; Fatahi, R.; Ebadi, A.; Taghavi, T.; Hassani, D.; Gradziel, T.; Chaparro, J. 2010. "Genetic variation of S-alleles in wild almonds and their related Prunus species." Australian Journal of Crop Science. Retrieved from http://www.highbeam.com/doc/1P3-2243615241.html.
  21. De Cuyper, B.; Sonneveld, T.; Tobutt, K. 2005. "Determining self-incompatibility genotypes in Belgian wild cherries." Molecular Ecology, 14 (4): 945-955.
  22. Downey, S.; Iezzoni, A. 2000. "Polymorphic DNA Markers in Black Cherry (Prunus serotina) Are Identified Using Sequences from Sweet Cherry, Peach, and Sour Cherry." Journal of the American Society for Horticultural Science, 125 (1): 76-80.
  23. Halász, J.; Fodor, A.; Hegedüs, A.; Pedryc, A. 2008. "Identification of a new self-incompatibility allele (S31) in a Hungarian almond cultivar and its reliable detection." Scientia Horticulturae, 116 (4): 448-451.
  24. Banovic, B.; Survanovsky, N.; Konstantinovic, M.; Maksimovic, V 2007. "Basic RNases of wild almond (Prunus webbii): cloning and characterization of six new S-RNase and one non-S RNase genes." Journal of Plant Physiology, 166 (4): 395-402.
  25. Sonneveld, T.; Robbins, T.; Boskovic, R.; Tobutt, K. 2001. "Cloning of six cherry self-incompatibility alleles and development of allele-specific PCR detection." Theoretical and Applied Genetics, 102: 1046-1055.
  26. Yaegaki, H.; Shimada, T.; Moriguchi, T.; Hayama, H.; Haji, T.; Yamaguchi, M. 2001. "Molecular characterization of S-RNase genes and S-genotypes in the Japanese apricot (Prunus mume)." Sexual Plant Reproduction, 13 (5): 251-257.
  27. Beppu, K.; Yamane, H.; Yaegaki, H.; Yamaguchi, M.; Kataoka, I. 2002. "Diversity of S-RNase genes and Shaplotypes in Japanese plum (Prunus salicina Lindl.). " The Journal of Horticultural Science and Biotechnology, 77: 658-665.
  28. Ioerger, T.; Clark, A.; Kao, T. 1990. "Polymorphism at the self-incompatibility locus in Solanaceae predates speciation." Proceedings of the National Academy of Sciences of the United States of America, 87 (24): 9732-9735.

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